PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G060000.1.p
Common NamePRUPE_ppa021837mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 266aa    MW: 28660.3 Da    PI: 8.6054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G060000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-1176122354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  +k+L
  Prupe.4G060000.1.p  76 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLATVISQVKEL 122
                         58*************************8.....7********9999888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.00273122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-976122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1277124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1277124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1079128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.06E-5161233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAFYSFNSNS SFRSEYSSLF DTFTHGSSGF GGALRGGGSV LPHSLVLDSE KGELIKAPAR  60
VGKKGVSEAK ALAALKNHSE AERRRRERIN AHLSTLRGLV PCTEKMDKAA LLATVISQVK  120
ELKKDALESS KGFLIPVDAD EVQVEPYDTG AGDGTISVRA SVCCEYRSEL LSDLREALDS  180
LHLKMVKADI ATLGNRVKNV FVFTSCKERS NDADADAFQL LASSVHQALS SVLDKASASP  240
EYSPRTTLPS KRRRVSYFDT SSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186ERRRRE
2250254KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894270.0KP689427.1 Prunus pseudocerasus isolate Unigene6250 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212891.10.0hypothetical protein PRUPE_ppa021837mg
TrEMBLM5X4S70.0M5X4S7_PRUPE; Uncharacterized protein
STRINGGLYMA07G32690.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-35bHLH family protein